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miRBase |
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Stem-loop sequence aae-mir-1175 |
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Accession | MI0013470 (change log) | |||||
Description | Aedes aegypti miR-1175 stem-loop | |||||
Gene family | MIPF0000715; mir-1175 | |||||
Literature search |
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5 open access papers mention aae-mir-1175 | |||||
Stem-loop |
ac a - u uc a agua 5' gauaugaa uaagu ggag agugg uc ucgcuu u |||||||| ||||| |||| ||||| || |||||| 3' cuauacuu auuca ccuc ucauc ag agugaa u au a g u uu - aaga |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence aae-miR-1175-5p |
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Accession | MIMAT0014264 |
Previous IDs | aae-miR-1175 |
Sequence |
13 - aaguggaguaguggucucaucg - 34 |
Deep sequencing | 62 reads, 2 experiments |
Evidence | experimental; 454 [1], Illumina [2] |
Mature sequence aae-miR-1175-3p |
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Accession | MIMAT0015371 |
Previous IDs | aae-miR-1175* |
Sequence |
51 - ugagauucuacuucuccgacuuaa - 74 |
Deep sequencing | 9 reads, 2 experiments |
Evidence | experimental; 454 [1] |
References |
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1 | |
2 |
PMID:20167119
"Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
BMC Genomics. 11:119(2010).
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