miRBase entry: aae-mir-137-1

Stem-loop aae-mir-137-1


Accession
MI0013480
Description
Aedes aegypti aae-mir-137-1 precursor miRNA
Gene family
MIPF0000106; mir-137

Literature search
1 open access papers mention aae-mir-137-1
(2 sentences)

Sequence

11734 reads, 586 reads per million, 2 experiments
uucaucgagcaacuugguuggccacgcguauucuuggguuauuaacacacuguuuauguuguUAUUGCUUGAGAAUACACGUAGuugacaaguguuucacaucg
......(((((.((((.(((((.(((.((((((((((((...(((((.((.......)))))))..)))))))))))).))).)))))))))))))).......

Structure
-uucauc     a    g     c   c            uau     c  ug 
       gagca cuug uuggc acg guauucuugggu   uaaca ac  u
       ||||| |||| ||||| ||| ||||||||||||   ||||| ||  u
       uuugu gaac aguuG UGC CAUAAGAGUUCG   AUugu ug  u
gcuacac     -    -     A   A            -UU     -  ua 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.1191: 97782-97885 [+]

Database links

Mature aae-miR-137

Accession MIMAT0014274
Description Aedes aegypti aae-miR-137 mature miRNA
Sequence 63 - UAUUGCUUGAGAAUACACGUAG - 84
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119