miRBase entry: aae-mir-283

Stem-loop aae-mir-283


Accession
MI0013486
Description
Aedes aegypti aae-mir-283 precursor miRNA
Gene family
MIPF0000054; mir-216

Literature search
4 open access papers mention aae-mir-283
(7 sentences)

Sequence

4214 reads, 217 reads per million, 2 experiments
guucgacugaaagguCAAUAUCAGCUGGUAAUUCUGGGCuuaccccaccguuauacgcuucccggaauuccaacugauauccacuuuuuagucgagaugguca
.((((((((((((((..(((((((.(((.(((((((((......................)))))))))))).)))))))..)))))))))))))).......

Structure
------g              CA       C   U         Cuuaccccac 
       uucgacugaaaggu  AUAUCAG UGG AAUUCUGGG          c
       ||||||||||||||  ||||||| ||| |||||||||           
       gagcugauuuuuca  uauaguc acc uuaaggccc          g
acuggua              cc       a   -         uucgcauauu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.68: 2729329-2729431 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aae-mir-283
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aae-miR-283

Accession MIMAT0014279
Description Aedes aegypti aae-miR-283 mature miRNA
Sequence 16 - CAAUAUCAGCUGGUAAUUCUGGGC - 39
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119