Stem-loop sequence aae-mir-124

AccessionMI0013488 (change log)
DescriptionAedes aegypti miR-124 stem-loop
Gene family MIPF0000021; mir-124
Literature search

1 open access papers mention aae-mir-124
(4 sentences)

Stem-loop
   uuuu   c      c      cg    a    ---u  ua 
5'     cuc ugguau cacugc  gccu uaug    cc  u
       ||| |||||| ||||||  |||| ||||    ||   
3'     gag accgua guggcg  cgga auac    gg  u
   --gc   a      a      ca    -    ucau  cu 
Get sequence
Deep sequencing
291238 reads, 1.48e+04 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
Coordinates (AaegL1) Overlapping transcripts
supercont1.6: 1664615-1664690 [-]
intergenic
Database links

Mature sequence aae-miR-124

Accession MIMAT0014282
Sequence

50 - 

uaaggcacgcggugaaugc

 - 68

Get sequence
Deep sequencing290770 reads, 2 experiments
Evidence experimental; 454 [1], Illumina [2]

References

1
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).
2