Stem-loop sequence aae-mir-210

AccessionMI0013499 (change log)
DescriptionAedes aegypti miR-210 stem-loop
Gene family MIPF0000086; mir-210
Literature search

4 open access papers mention aae-mir-210
(19 sentences)

Stem-loop 
   cucauugc     c  ac   -         -   g 
5'         agcug ug  cac ugcacaaga uua a
           ||||| ||  ||| ||||||||| ||| u
3'         ucggc ac  gug gcguguucu agu u
   ----guua     a  -a   u         c   a
Get sequence
Deep sequencing
131659 reads, 6.35e+03 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
Coordinates (AaegL1) Overlapping transcripts
supercont1.512: 515644-515711 [-]
intergenic
Database links

Mature sequence aae-miR-210

Accession MIMAT0014293
Sequence

44 -  

cuugugcgugugacaacgg

 - 62

Get sequence
Deep sequencing129045 reads, 2 experiments
Evidence experimental; 454 [1], Illumina [2]

References

1
PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).
2
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).