miRBase entry: aae-mir-1000-2

Stem-loop aae-mir-1000-2


Accession
MI0013503
Description
Aedes aegypti aae-mir-1000-2 precursor miRNA
Gene family
MIPF0000701; mir-1000

Literature search
3 open access papers mention aae-mir-1000-2
(15 sentences)

Sequence

5662 reads, 294 reads per million, 2 experiments
cgauuuuugcuagaaaccgauuAUAUUGUCCUGUCACAGCAGUacuguuacaaauuuacuguuguuucgggacauuuacauugauucuagccgucac
........(((((((..((((.....(((((((..(((((((((............)))))))))..))))))).....)))).)))))))......

Structure
cgauuuuu       ac    uAUAU       UC         cuguu 
        gcuagaa  cgau     UGUCCUG  ACAGCAGUa     a
        |||||||  ||||     |||||||  |||||||||      
        cgaucuu  guua     acagggc  uguugucau     c
--cacugc       -a    cauuu       uu         uuaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.3798: 170-266 [-]

Database links

Mature aae-miR-1000

Accession MIMAT0014297
Description Aedes aegypti aae-miR-1000 mature miRNA
Sequence 23 - AUAUUGUCCUGUCACAGCAGU - 43
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119