miRBase entry: aae-mir-375

Stem-loop aae-mir-375


Accession
MI0013504
Description
Aedes aegypti aae-mir-375 precursor miRNA
Gene family
MIPF0000114; mir-375

Literature search
5 open access papers mention aae-mir-375
(7 sentences)

Sequence

33 reads, 2 reads per million, 2 experiments
uggaagaauccgaguuacuuaagcccaacguacagaaacuugaaucugaaugccguucuagauuggcuugcuagaagUUUGUUCGUUUGGCUCGAGUUAugcggauucuucugauc
.(((((((((((.((.((((.((((.((((.(((..((((....((((...((((........))))....))))))))))).)))).)))).)))).)).)))))))))))....

Structure
---u           a  u    a    c    u   ga    ugaa    -aau    uuc 
    ggaagaauccg gu acuu agcc aacg aca  aacu    ucug    gccg   u
    ||||||||||| || |||| |||| |||| |||  ||||    ||||    ||||    
    ucuucuuaggc uA UGAG UCGG UUGC UGU  UUga    agau    cggu   a
cuag           g  U    C    U    U   --    ----    cguu    uag 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.309: 1318735-1318850 [-]

Database links

Mature aae-miR-375

Accession MIMAT0014298
Description Aedes aegypti aae-miR-375 mature miRNA
Sequence 78 - UUUGUUCGUUUGGCUCGAGUUA - 99
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119