Stem-loop sequence aae-mir-282-1

Accession

MI0013517 (change log)

Description

Aedes aegypti miR-282-1 stem-loop

Gene family

MIPF0000150; mir-282

Literature search

2 open access papers mention aae-mir-282-1
(4 sentences)

Stem-loop

   aucguc     -ca    -c  ---a     gua           cc      u      uuac  uccu   g 
5'       aucgu   ucgu  gc    caggu   aucuagccucu  uaggcu ugucug    cu    ugg a
         |||||   ||||  ||    |||||   |||||||||||  |||||| ||||||    ||    ||| a
3'       uggca   ggca  ug    gucua   uggauuggaga  guccga acagac    ga    acc u
   ------     acc    ac  aaaa     aag           ca      u      ---c  --uc   u 

Deep sequencing

85 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AaegL1): supercont1.369: 992964-993098 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013517

Mature sequence aae-miR-282-5p

• Accession: MIMAT0014311
• Previous IDs: aae-miR-282
• Sequence: 29 - aaucuagccucuccuaggcuuugucug - 55
• Deep sequencing: 118 reads, 2 experiments
• Evidence: experimental; 454 [1]

Mature sequence aae-miR-282-3p

• Accession: MIMAT0014312
• Previous IDs: aae-miR-282*
• Sequence: 85 - acauagccugacagagguuagg - 106
• Deep sequencing: 38 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).