Stem-loop sequence aae-mir-309b

Accession

MI0013526 (change log)

Description

Aedes aegypti miR-309b stem-loop

Gene family

MIPF0000140; mir-3

Literature search

2 open access papers mention aae-mir-309b
(2 sentences)

Stem-loop

   u      u      cc       --   --     u 
5'  uaugcg caaacu  guucagu  ugg  uggag c
    |||||| ||||||  |||||||  |||  ||||| a
3'  auacgc guuuga  cggguca  acu  accuu u
   a      u      ua       cu   ga     u 

Deep sequencing

8 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AaegL1): supercont1.464: 825629-825699 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aae-mir-309b

• aae-mir-286a: supercont1.464: 824995-825091 [+]
• aae-mir-2944b: supercont1.464: 825313-825374 [+]
• aae-mir-2944a: supercont1.464: 825450-825511 [+]
• aae-mir-309b: supercont1.464: 825629-825699 [+]

Database links

• miRBase Tracker:MI0013526

Mature sequence aae-miR-309b-5p

• Accession: MIMAT0014319
• Previous IDs: aae-miR-309b*
• Sequence: 6 - cgucaaacuccguucaguuggug - 28
• Evidence: experimental; 454 [1]

Mature sequence aae-miR-309b-3p

• Accession: MIMAT0014320
• Previous IDs: aae-miR-309b
• Sequence: 47 - ucacugggcauaguuugucgca - 68
• Deep sequencing: 8 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).