miRBase entry: hsa-mir-3116-2

Stem-loop hsa-mir-3116-2


Accession
MI0014129
Symbol
HGNC: MIR3116-2
Description
Homo sapiens hsa-mir-3116-2 precursor miRNA
Gene family
MIPF0001002; mir-3116

Literature search
1 open access papers mention hsa-mir-3116-2
(1 sentences)

Sequence

232 reads, 8 reads per million, 37 experiments
uauugagucccuacuauguuccaggcaccuacgauacccagUGCCUGGAACAUAGUAGGGACUcaaua
((((((((((((((((((((((((((((............))))))))))))))))))))))))))))

Structure
                            cuacg 
uauugagucccuacuauguuccaggcac     a
||||||||||||||||||||||||||||      
auaacUCAGGGAUGAUACAAGGUCCGUg     u
                            accca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 62078789-62078856 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from hsa-mir-3116-2
Name Accession Chromosome Start End Strand Confidence




Disease association
hsa-mir-3116-2 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-3116

Accession MIMAT0014978
Description Homo sapiens hsa-miR-3116 mature miRNA
Sequence 42 - UGCCUGGAACAUAGUAGGGACU - 63
Evidence experimental
Illumina [1-2]
Database links
Predicted targets

References

  1. PubMed ID: 20300190
    Characterization of the Melanoma miRNAome by Deep Sequencing
    "Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
    "PLoS One (2010) 5:e9685

  2. PubMed ID: 20224791
    Discovery of novel microRNAs in female reproductive tract using next generation sequencing
    Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH
    PLoS One (2010) 5:e9637