Stem-loop hsa-mir-3152

Accession

MI0014179

Symbol

HGNC: MIR3152

Description

Homo sapiens hsa-mir-3152 precursor miRNA

Literature search

3 open access papers mention hsa-mir-3152
(4 sentences)

Sequence

37 reads, 8 reads per million, 12 experiments

gugcagaguuAUUGCCUCUGUUCUAACACAAGacuaggcuucccUGUGUUAGAAUAGGGGCAAUAAcucugcac
((((((((((((((((((((((((((((((.(..........).))))))))))))))))))))))))))))))

Structure

                              A acua 
gugcagaguuAUUGCCUCUGUUCUAACACA G    g
|||||||||||||||||||||||||||||| |     
cacgucucAAUAACGGGGAUAAGAUUGUGU c    g
                              c cuuc 

Annotation confidence Not enough data

Comments

Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method [1]. Stark et al. later validated its expression in human using high-throughput sequencing [2].

Genome context

chr9: 18573306-18573379 [+]

Mature hsa-miR-3152-3p

• Accession: MIMAT0015025
• Description: Homo sapiens hsa-miR-3152-3p mature miRNA
• Sequence: 45 - UGUGUUAGAAUAGGGGCAAUAA - 66
• Evidence: experimental ; Illumina [2-4]

Mature hsa-miR-3152-5p

• Accession: MIMAT0019207
• Description: Homo sapiens hsa-miR-3152-5p mature miRNA
• Sequence: 11 - AUUGCCUCUGUUCUAACACAAG - 32
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298


2. PubMed ID: 20300190
   Characterization of the Melanoma miRNAome by Deep Sequencing
   "Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
   "PLoS One (2010) 5:e9685


3. PubMed ID: 20224791
   Discovery of novel microRNAs in female reproductive tract using next generation sequencing
   Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH
   PLoS One (2010) 5:e9637


4. PubMed ID: 21199797
   Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene
   "Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C"
   "Cancer Res (2011) 71:78-86