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miRBase |
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Stem-loop sequence aly-MIR156f |
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Accession | MI0014507 (change log) | ||||
Description | Arabidopsis lyrata miR156f stem-loop | ||||
Gene family | MIPF0000008; MIR156 | ||||
Stem-loop |
g u ag ugaa ------ a -uug u u uaauu ---u - ggcu uu uauu u 5' guau uga auuaag guauaua uc auaaau uggauggu au ga gag ga ggugacaga agagagugagcacacauggu uuc gca uga g |||| ||| |||||| ||||||| || |||||| |||||||| || || ||| || ||||||||| |||||||||||||||||||| ||| ||| ||| g 3' caua guu uaguuu cauauau ag uauuua auuuacca ua cu cuc cu ccacugucu ucucucacucguguguaucg aag cgu acu u - u aa --ug auauuu a caua u - --ucu uccc a ---- uu ---- u |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence aly-miR156f-5p |
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Accession | MIMAT0017407 |
Previous IDs | aly-miR156f |
Sequence |
68 - ugacagaagagagugagcac - 87 |
Deep sequencing | 240 reads, 1 experiments |
Evidence | experimental; Illumina [1], SOLiD [2] |
Database links |
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Mature sequence aly-miR156f-3p |
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Accession | MIMAT0017408 |
Previous IDs | aly-miR156f* |
Sequence |
139 - gcucacucucuaucugucacc - 159 |
Deep sequencing | 3 reads, 1 experiments |
Evidence | experimental; Illumina [1], SOLiD [2] |
References |
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1 |
PMID:20407027
"MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
Plant Cell. 22:1074-1089(2010).
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2 |
PMID:20407023
"Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
Plant Cell. 22:1090-1103(2010).
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