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miRBase |
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Stem-loop sequence aly-MIR169m |
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Accession | MI0014557 (change log) | |||||||||
Description | Arabidopsis lyrata miR169m stem-loop | |||||||||
Gene family | MIPF0000012; MIR169_1 | |||||||||
Stem-loop |
---ucauuauuua -a aa - u uu - u u - u ---- auugucauguuugacaagug 5' gaagg aauguc agauga auaggagaa cauau gg uagccaagga gacu gccu gu ucuu ugaguaaaaugguu a ||||| |||||| |||||| ||||||||| ||||| || |||||||||| |||| |||| || |||| |||||||||||||| 3' cuucc uugcag ucuacu ugucuucuu guaua cc aucgguucuu cuga cgga ua agaa acucauuuuaccag c agaauaaaaucua aa ac c - uu u - - g c aacu caaugaacuauauugaauau |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence aly-miR169m-5p |
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Accession | MIMAT0017509 |
Previous IDs | aly-miR169m |
Sequence |
50 - uagccaaggaugacuugccug - 70 |
Deep sequencing | 31 reads, 1 experiments |
Evidence | experimental; Illumina [1], SOLiD [2] |
Mature sequence aly-miR169m-3p |
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Accession | MIMAT0017510 |
Previous IDs | aly-miR169m* |
Sequence |
160 - ggcagucuucuuggcuauc - 178 |
Evidence | experimental; Illumina [1], SOLiD [2] |
References |
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1 |
PMID:20407027
"MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
Plant Cell. 22:1074-1089(2010).
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2 |
PMID:20407023
"Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
Plant Cell. 22:1090-1103(2010).
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