Accession
MI0014557
Description
Arabidopsis lyrata
aly-MIR169m precursor miRNA
Gene family
MIPF0000012;
MIR169_1
Sequence
6
reads,
209
reads per million, 1 experiments
ucauuauuuagaaggaaaugucaaagaugaauaggagaaucauauuuggUAGCCAAGGAUGACUUGCCUGuuucuuugaguaaaaugguuauugucauguuugacaagugacuauaaguuauaucaaguaacgaccauuuuacucaucaaaagacaugaGGCAGUCUUCUUGGCUAUCcuuauauguucuucugucucaucucagacguuaaccuucaucuaaaauaaga
..........(((((.((((((..(((((((((((((((.(((((..((((((((((((.((((.((((...((((((((((((((((((.((((((....))))))((((((...))))))..........))))))))))))))....))))....)))))))))))))))))).))..)))))))))))))).))))))..))))))..))))).............
..........(((((.((((((..(((((((((((((((.(((((..((((((((((((.((((.((((...((((((((((((((((((.((((((....))))))((((((...))))))..........))))))))))))))....))))....)))))))))))))))))).))..)))))))))))))).))))))..))))))..))))).............
Structure
---ucauuauuua -a aa - u uu - U U -Guu ---- ------------------------a u
gaagg aauguc agauga auaggagaa cauau gg UAGCCAAGGA GACU GCCU ucuu ugaguaaaaugguu uuguca g
||||| |||||| |||||| ||||||||| ||||| || |||||||||| |||| |||| |||| |||||||||||||| ||||||
cuucc uugcag ucuacu ugucuucuu guaua cC AUCGGUUCUU CUGA CGGa agaa acucauuuuaccag aacagu u
agaauaaaaucua aa ac c - uu U - - guac aacu caaugaacuauauugaauaucagug u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
GL348717.1: 3151345-3151574 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from aly-MIR169m
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR169m-5p
| Accession | MIMAT0017509 |
| Description | Arabidopsis lyrata aly-miR169m-5p mature miRNA |
| Sequence | 50 - UAGCCAAGGAUGACUUGCCUG - 70 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR169m-3p
| Accession | MIMAT0017510 |
| Description | Arabidopsis lyrata aly-miR169m-3p mature miRNA |
| Sequence | 160 - GGCAGUCUUCUUGGCUAUC - 178 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
References
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