![]() |
miRBase |
![]() |
![]() |
Stem-loop sequence aly-MIR171a |
|||||
Accession | MI0014560 (change log) | ||||
Description | Arabidopsis lyrata miR171a stem-loop | ||||
Gene family | MIPF0000030; MIR171_1 | ||||
Stem-loop |
uuu uu uuccuuu a ucacuua c cc uu c c cu ccugaccacacucacguc 5' ucg uuuaua guu g ucua ag acgagagagu cu gauauuggc ugguuca ucagau uc g ||| |||||| ||| | |||| || |||||||||| || ||||||||| ||||||| |||||| || 3' agc aaaugu uag c aggu uc ugcucucuca ga cuauaaccg gccgagu agucua ag u --u uc --uguuu - -uuuauc - -u cu c u uu aucucucuuacguauaca |
||||
Deep sequencing |
| ||||
Confidence |
Annotation confidence: not enough data
| ||||
Genome context |
|
||||
Database links |
|
Mature sequence aly-miR171a-5p |
|
Accession | MIMAT0017515 |
Previous IDs | aly-miR171a* |
Sequence |
59 - uauuggccugguucacucaga - 79 |
Deep sequencing | 3 reads, 1 experiments |
Evidence | experimental; Illumina [1], SOLiD [2] |
Mature sequence aly-miR171a-3p |
|
Accession | MIMAT0017516 |
Previous IDs | aly-miR171a |
Sequence |
130 - ugauugagccgcgccaauauc - 150 |
Deep sequencing | 92 reads, 1 experiments |
Evidence | experimental; Illumina [1], SOLiD [2] |
Database links |
|
References |
|
1 |
PMID:20407027
"MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
Plant Cell. 22:1074-1089(2010).
|
2 |
PMID:20407023
"Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
Plant Cell. 22:1090-1103(2010).
|