Accession
MI0014563
Description
Arabidopsis lyrata
aly-MIR172a precursor miRNA
Gene family
MIPF0000035;
MIR172
Sequence
2732
reads,
95258
reads per million, 1 experiments
ggagccacggucgcuguuugcugcuGUGGCAUCAUCAAGAUUCACAucuguugauggacgguggugauucgcucuccccaaaguucucuaugaaaaugAGAAUCUUGAUGAUGCUGCAUcggcaaucaacggcuauucuuuuucucucc
((((....(((((.((.((((((.(((((((((((((((((((.(((.(((.((.((((..(((.((.......)).)))..)))))).)))...))).))))))))))))))))))).)))))).)).)))))...........))))
((((....(((((.((.((((((.(((((((((((((((((((.(((.(((.((.((((..(((.((.......)).)))..)))))).)))...))).))))))))))))))))))).)))))).)).)))))...........))))
Structure
-------ccac c u c A --c u u gg u uu
ggag ggucg ug uugcug uGUGGCAUCAUCAAGAUUC CAu ugu ga ggac ugg ga c
|||| ||||| || |||||| ||||||||||||||||||| ||| ||| || |||| ||| || g
ccuc ucggc ac aacggc ACGUCGUAGUAGUUCUAAG gua gua cu cuug acc cu c
ucuuuuucuua a u U A aaa u - aa c cu
Annotation confidence
High
Do you think this miRNA is real?
Genome context
GL348716.1: 12144107-12144255 [+]
Database links
Mature aly-miR172a-5p
| Accession | MIMAT0017521 |
| Description | Arabidopsis lyrata aly-miR172a-5p mature miRNA |
| Sequence | 26 - GUGGCAUCAUCAAGAUUCACA - 46 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR172a-3p
| Accession | MIMAT0017522 |
| Description | Arabidopsis lyrata aly-miR172a-3p mature miRNA |
| Sequence | 99 - AGAAUCUUGAUGAUGCUGCAU - 119 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
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References
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