miRBase entry: aly-MIR172c

Stem-loop aly-MIR172c


Accession
MI0014565
Description
Arabidopsis lyrata aly-MIR172c precursor miRNA
Gene family
MIPF0000035; MIR172


Sequence

31 reads, 1081 reads per million, 1 experiments
agcuacuguucgcuguuGGAGCAUCAUCAAGAUUCACAaaucaucaaguauucguguaaaugaacccauuuauaauuauauuguugauguauguaugAGAAUCUUGAUGAUGCUGCAGcugcaaucaguggcu
((((((((...((.((((.(((((((((((((((((((...((((((((((...((((((((....))))))))...))))..))))))..)))....)))))))))))))))).)))).))...))))))))

Structure
        uuc  u    G                ----   aau      --    ucg        a 
agcuacug   gc guuG AGCAUCAUCAAGAUUC    ACA   caucaa  guau   uguaaaug a
||||||||   || |||| ||||||||||||||||    |||   ||||||  ||||   ||||||||  
ucggugac   cg cGAC UCGUAGUAGUUCUAAG    ugu   guaguu  uaua   auauuuac c
        uaa  u    G                Agua   -au      gu    uua        c 


Annotation confidence Not enough data
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Genome context
GL348715.1: 4586846-4586978 [-]

Database links

Mature aly-miR172c-5p

Accession MIMAT0017525
Description Arabidopsis lyrata aly-miR172c-5p mature miRNA
Sequence 18 - GGAGCAUCAUCAAGAUUCACA - 38
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR172c-3p

Accession MIMAT0017526
Description Arabidopsis lyrata aly-miR172c-3p mature miRNA
Sequence 98 - AGAAUCUUGAUGAUGCUGCAG - 118
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103