Stem-loop aly-MIR395b

Accession

MI0014576

Description

Arabidopsis lyrata aly-MIR395b precursor miRNA

Gene family

MIPF0000016; MIR395

Sequence

gccaaauguccccaugaGUUCCCUUUAACGCUUCAUUGuuaaauacucaaagccacauugguuuguauauaacaCUGAAGUGUUUGGGGGGACUCuuggugccauuuuggc
((((((((.(.(((.((((((((((.(((((((((.(((((.((((...((((((...)))))))))).))))).))))))))).)))))))))).))).).)).))))))

Structure

      -  u c   u          U         U     a    uca      c 
gccaaa ug c cca gaGUUCCCUU AACGCUUCA UGuua auac   aagcca  
|||||| || | ||| |||||||||| ||||||||| ||||| ||||   |||||| a
cgguuu ac g ggu CUCAGGGGGG UUGUGAAGU acaau uaug   uuuggu  
      u  c u   u          U         C     a    ---      u 

Annotation confidence Not enough data

Genome context

GL348713.1: 10964919-10965029 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR395b

Mature aly-miR395b-5p

• Accession: MIMAT0017547
• Description: Arabidopsis lyrata aly-miR395b-5p mature miRNA
• Sequence: 18 - GUUCCCUUUAACGCUUCAUUG - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR395b-3p

• Accession: MIMAT0017548
• Description: Arabidopsis lyrata aly-miR395b-3p mature miRNA
• Sequence: 75 - CUGAAGUGUUUGGGGGGACUC - 95
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103