Stem-loop aly-MIR395d

Accession

MI0014578

Description

Arabidopsis lyrata aly-MIR395d precursor miRNA

Gene family

MIPF0000016; MIR395

Sequence

acaaaauauaauucgacuagauguccucuagaGUUCUCCCGAACACUUCAUUGgaaauuuguuauucgguaaacuaccaauuaauuccaCUGAAGUGUUUGGGGGAACUCcggaugucauuuggugaugucaagccaugu
............((.((((((((.(.(((.((((((((((((((((((((.((((.....((((...((((...))))...)))))))).)))))))))))))))))))).))).).)))))))))).............

Structure

-acaaaauauaau  g        u c   a                    U    aauuu    uuc    a 
             uc acuagaug c ucu gaGUUCUCCCGAACACUUCA UGga     guua   ggua  
             || |||||||| | ||| |||||||||||||||||||| ||||     ||||   |||| a
             ag ugguuuac g agg CUCAAGGGGGUUUGUGAAGU accu     uaau   ccau  
uguaccgaacugu  -        u u   c                    C    -----    uaa    c 

Annotation confidence Not enough data

Genome context

GL348714.1: 13997965-13998104 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from aly-MIR395d

Mature aly-miR395d-5p

• Accession: MIMAT0017551
• Description: Arabidopsis lyrata aly-miR395d-5p mature miRNA
• Sequence: 33 - GUUCUCCCGAACACUUCAUUG - 53
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR395d-3p

• Accession: MIMAT0017552
• Description: Arabidopsis lyrata aly-miR395d-3p mature miRNA
• Sequence: 90 - CUGAAGUGUUUGGGGGAACUC - 110
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103