Stem-loop aly-MIR397a

Accession

MI0014583

Description

Arabidopsis lyrata aly-MIR397a precursor miRNA

Sequence

1 reads, 35 reads per million, 1 experiments

uccuggauuugaaugaacaUCAUUGAGUGCAGCGUUGAUGuaauuuccuuuuuuuuucauuguugaauggaauuaaaagaauuuacaCCGGCGUUGCGCUCAAUUAUGuuuuucuuauuuucagga
(((((((..(((..((((((.((((((((((((((((.(((((.(((.((((..(((((((....)))))))..))))))).))))).)))))))))))))))).))))))...)))..)))))))

Structure

       uu   -au      C                A     u   c    uu       g 
uccugga  uga   gaacaU AUUGAGUGCAGCGUUG UGuaa uuc uuuu  uuucauu u
|||||||  |||   |||||| |||||||||||||||| ||||| ||| ||||  |||||||  
aggacuu  auu   uuuGUA UAACUCGCGUUGCGGC acauu aag aaaa  aagguaa u
       uu   cuu      U                C     u   -    uu       g 

Annotation confidence Not enough data

Genome context

GL348718.1: 22804022-22804147 [+]

Mature aly-miR397a-5p

• Accession: MIMAT0017561
• Description: Arabidopsis lyrata aly-miR397a-5p mature miRNA
• Sequence: 20 - UCAUUGAGUGCAGCGUUGAUG - 40
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR397a-3p

• Accession: MIMAT0017562
• Description: Arabidopsis lyrata aly-miR397a-3p mature miRNA
• Sequence: 88 - CCGGCGUUGCGCUCAAUUAUG - 108
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103