miRBase entry: aly-MIR397a

Stem-loop aly-MIR397a


Accession
MI0014583
Description
Arabidopsis lyrata aly-MIR397a precursor miRNA
Gene family
MIPF0000120; MIR397


Sequence

1 reads, 35 reads per million, 1 experiments
uccuggauuugaaugaacaUCAUUGAGUGCAGCGUUGAUGuaauuuccuuuuuuuuucauuguugaauggaauuaaaagaauuuacaCCGGCGUUGCGCUCAAUUAUGuuuuucuuauuuucagga
(((((((..(((..((((((.((((((((((((((((.(((((.(((.((((..(((((((....)))))))..))))))).))))).)))))))))))))))).))))))...)))..)))))))

Structure
       uu   -au      C                A     u   c    uu       g 
uccugga  uga   gaacaU AUUGAGUGCAGCGUUG UGuaa uuc uuuu  uuucauu u
|||||||  |||   |||||| |||||||||||||||| ||||| ||| ||||  |||||||  
aggacuu  auu   uuuGUA UAACUCGCGUUGCGGC acauu aag aaaa  aagguaa u
       uu   cuu      U                C     u   -    uu       g 


Annotation confidence Not enough data
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Genome context
GL348718.1: 22804022-22804147 [+]

Database links

Mature aly-miR397a-5p

Accession MIMAT0017561
Description Arabidopsis lyrata aly-miR397a-5p mature miRNA
Sequence 20 - UCAUUGAGUGCAGCGUUGAUG - 40
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR397a-3p

Accession MIMAT0017562
Description Arabidopsis lyrata aly-miR397a-3p mature miRNA
Sequence 88 - CCGGCGUUGCGCUCAAUUAUG - 108
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103