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miRBase |
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Stem-loop sequence aly-MIR397b |
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Accession | MI0014584 (change log) | |||||
Description | Arabidopsis lyrata miR397b stem-loop | |||||
Gene family | MIPF0000120; MIR397 | |||||
Stem-loop |
--uuu u c aguuuac uuc g 5' ccuggg gaa aaacau auugagugcagcguugaugua uuauuuua cauu u |||||| ||| |||||| ||||||||||||||||||||| |||||||| |||| 3' ggacuu cuu uuugua uaacuuacguugcgacuacau aguaaaau guaa u uuaau - u aagacau uaa g |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence aly-miR397b-5p |
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Accession | MIMAT0017563 |
Previous IDs | aly-miR397b |
Sequence |
19 - ucauugagugcagcguugaug - 39 |
Deep sequencing | 1 reads, 1 experiments |
Evidence | experimental; Illumina [1], SOLiD [2] |
Mature sequence aly-miR397b-3p |
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Accession | MIMAT0017564 |
Previous IDs | aly-miR397b* |
Sequence |
94 - ucagcguugcauucaauuaug - 114 |
Evidence | experimental; Illumina [1], SOLiD [2] |
References |
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1 |
PMID:20407027
"MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
Plant Cell. 22:1074-1089(2010).
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2 |
PMID:20407023
"Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
Plant Cell. 22:1090-1103(2010).
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