Accession
MI0014585
Description
Arabidopsis lyrata
aly-MIR398a precursor miRNA
Gene family
MIPF0000107;
MIR398
Sequence
76
reads,
2650
reads per million, 1 experiments
uaaucaguggaaguaaaguaugaagaaaaagagaagaacaacaggaggugaaaucucaaaGGAGUGUCAUGAGAACACAGAuccuaugguuucuuuacauuuucauugaaaccauugaguuUGUGUUCUCAGGUCACCCCUUugaaucuccccuguuccuuuauuuuaccuuaccaaaauua
.......(((((((((((((.............(((...((((((.((.((....(((((((.(((.(.(((((((((((((.(.((((((((..............)))))))).).))))))))))))).).))).))))))).)).)))))))).)))))))))).))).)))......
.......(((((((((((((.............(((...((((((.((.((....(((((((.(((.(.(((((((((((((.(.((((((((..............)))))))).).))))))))))))).).))).))))))).)).)))))))).)))))))))).))).)))......
Structure
uaaucag - - ugaagaaaaagag aac a u aauc A U A c u uuuaca
ugg aag uaaagua aag aacagg gg ga ucaaaGG GUG C UGAGAACACAGAu c augguuuc u
||| ||| ||||||| ||| |||||| || || ||||||| ||| | ||||||||||||| | ||||||||
acc uuc auuuuau uuc uugucc cc cu aguUUCC CAC G ACUCUUGUGUuug g uaccaaag u
-auuaaa a c ------------- --c - u ---a C U G a u uuacuu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
GL348717.1: 1852452-1852633 [+]
Database links
Mature aly-miR398a-5p
| Accession | MIMAT0017565 |
| Description | Arabidopsis lyrata aly-miR398a-5p mature miRNA |
| Sequence | 61 - GGAGUGUCAUGAGAACACAGA - 81 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
Mature aly-miR398a-3p
| Accession | MIMAT0017566 |
| Description | Arabidopsis lyrata aly-miR398a-3p mature miRNA |
| Sequence | 122 - UGUGUUCUCAGGUCACCCCUU - 142 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
References
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