Accession
MI0014586
Description
Arabidopsis lyrata
aly-MIR398b precursor miRNA
Gene family
MIPF0000107;
MIR398
Sequence
5
reads,
174
reads per million, 1 experiments
gauauauuuugaagguaguggaucucgacaGGGUUGAUAUGAGGACACAUGuguaaucaacggcuguaaugacgccacgucauuguuacaUGUGUUCUCAGGUCACCCCUGcugagcucuuucucuaccgaccaucuuuauc
((((.........(((((.(((.((((.(((((.((((.((((((((((((((.............((((((((...)))))))).)))))))))))))).)))).))))).)))).)))....))))).........))))
((((.........(((((.(((.((((.(((((.((((.((((((((((((((.............((((((((...)))))))).)))))))))))))).)))).))))).)))).)))....))))).........))))
Structure
uauuuugaa ---u u a U A uaaucaacggcug c
gaua gguag gga cucg caGGG UGAU UGAGGACACAUGug uaaugacg
|||| ||||| ||| |||| ||||| |||| |||||||||||||| |||||||| c
cuau ccauc ucu gagu GUCCC ACUG ACUCUUGUGUacau guuacugc
uucuaccag ucuu c c C G ------------u a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
GL348718.1: 5876498-5876639 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR398b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR398b-5p
| Accession | MIMAT0017567 |
| Description | Arabidopsis lyrata aly-miR398b-5p mature miRNA |
| Sequence | 31 - GGGUUGAUAUGAGGACACAUG - 51 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR398b-3p
| Accession | MIMAT0017568 |
| Description | Arabidopsis lyrata aly-miR398b-3p mature miRNA |
| Sequence | 91 - UGUGUUCUCAGGUCACCCCUG - 111 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
References
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