miRBase entry: aly-MIR399b

Stem-loop aly-MIR399b


Accession
MI0014589
Description
Arabidopsis lyrata aly-MIR399b precursor miRNA
Gene family
MIPF0000015; MIR399


Sequence

5 reads, 174 reads per million, 1 experiments
cauguaagcucacaaguuuuaGGGCGCCUCUCCAUUGGCAGGuccuuuauuuccaaauauacacauacauauaugaauauagaaaauuucgauuuauauaugaccUGCCAAAGGAGAGUUGCCCUGaaacugguucagcuuaauuaaacacaug
((((((((((.((.((((((((((((.((((((.((((((((((........................((((((((((...(((...))).)))))))))))))))))))).)))))).)))))))))))).))..)))))........)))))

Structure
     --------     -c  a            C      A          cuuuauuuccaaauauacacauac          aua   a 
caugu        aagcu  ac aguuuuaGGGCG CUCUCC UUGGCAGGuc                        auauaugaau   gaa  
|||||        |||||  || |||||||||||| |||||| ||||||||||                        ||||||||||   ||| a
guaca        uucga  ug ucaaaGUCCCGU GAGAGG AACCGUccag                        uauauauuua   cuu  
     caaauuaa     cu  g            U      A          ------------------------          --g   u 


Annotation confidence Not enough data
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Genome context
GL348714.1: 1307899-1308052 [+]

Database links

Mature aly-miR399b-5p

Accession MIMAT0017573
Description Arabidopsis lyrata aly-miR399b-5p mature miRNA
Sequence 22 - GGGCGCCUCUCCAUUGGCAGG - 42
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR399b-3p

Accession MIMAT0017574
Description Arabidopsis lyrata aly-miR399b-3p mature miRNA
Sequence 106 - UGCCAAAGGAGAGUUGCCCUG - 126
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103