Stem-loop aly-MIR399d

Accession

MI0014591

Description

Arabidopsis lyrata aly-MIR399d precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

gagagauaauguaugguuggauuacuGGGCGAAUACUCCUAUGGCAGAuagcuuugccuagauaugcaagcaaaaugcuucucUGCCAAAGGAGAUUUGCCCCGcaauucauccaugcaaaacaauacaucuuuc
(((((((..(((((((.((((((.(.((((((((.(((((.(((((((.((((((((............)))))..)))..))))))).))))))))))))).).)))))).))))))).........)))))))

Structure

       -------aa       u      a u        A     A       -u   --     cuaga 
gagagau         uguaugg uggauu c GGGCGAAU CUCCU UGGCAGA  agc  uuugc     u
|||||||         ||||||| |||||| | |||||||| ||||| |||||||  |||  |||||      
cuuucua         acguacc acuuaa G CCCGUUUA GAGGA ACCGUcu  ucg  aaacg     a
       cauaacaaa       u      c C        -     A       cu   ua     aacgu 

Annotation confidence Not enough data

Genome context

GL348716.1: 16217498-16217632 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aly-MIR399d

Mature aly-miR399d-5p

• Accession: MIMAT0017577
• Description: Arabidopsis lyrata aly-miR399d-5p mature miRNA
• Sequence: 27 - GGGCGAAUACUCCUAUGGCAGA - 48
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR399d-3p

• Accession: MIMAT0017578
• Description: Arabidopsis lyrata aly-miR399d-3p mature miRNA
• Sequence: 84 - UGCCAAAGGAGAUUUGCCCCG - 104
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103