miRBase entry: aly-MIR771

Stem-loop aly-MIR771


Accession
MI0014598
Description
Arabidopsis lyrata aly-MIR771 precursor miRNA
Gene family
MIPF0001122; MIR771


Sequence

auuccacaUGAGCCUCUGUGGCAGCCCUCgcaaugaucucaguagagugcaugccaaguucuuguaaagacguagaugaGGGCUCCUCAGAUGUUCAUGucgaau
((((.((((((((.((((.((.((((((((((.((..(((....)))..))))).....((((((....))).))).))))))))).)))).)))))))).))))

Structure
    c        C    U  C       -----------------------   a  au   a 
auuc acaUGAGC UCUG GG AGCCCUC                       gca ug  cuc g
|||| |||||||| |||| || |||||||                       ||| ||  |||  
uaag uGUACUUG AGAC CC UCGGGag                       cgu ac  gag u
    c        U    U  -       uagaugcagaaauguucuugaac   -  gu   a 


Annotation confidence Not enough data
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Genome context
GL348717.1: 16404124-16404228 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR771
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR771-5p

Accession MIMAT0017591
Description Arabidopsis lyrata aly-miR771-5p mature miRNA
Sequence 9 - UGAGCCUCUGUGGCAGCCCUC - 29
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR771-3p

Accession MIMAT0017592
Description Arabidopsis lyrata aly-miR771-3p mature miRNA
Sequence 80 - GGGCUCCUCAGAUGUUCAUG - 99
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103