Stem-loop aly-MIR856

Accession

MI0014622

Description

Arabidopsis lyrata aly-MIR856 precursor miRNA

Gene family

MIPF0001162; MIR856

Sequence

gcauauguaagaggugagacuguuggcuuUAAUUCCACCAAUAACUUCAGCugcgccaugaagaguagacagaagauuauggcgguugaggguuucuucguagagguugaucgauccuuaauguccuguggaauuuaaguuuccgaaacuguuuaugaggacauacaagaucguucaguguccaagaagaagccugagccgcuauaaucaucggucuaaucucuuuagcagaUGAUGUUAUUUGUGGUAUAAAaccaacaguuuuaucacucucacauagu
...(((((.(((((((((((((((((.((((...((((.((((((.(((.((((....((((((((((((.((.(((((((((((((..((((((((((...((.(((((.(((((....(((((((...((((...(((((...)))))))))...)))))))....))))).))))).))...)))))))))).))))))))))))).)).)))))..))))))))))).))).)))))).))))..)))).)))))))))))))..)))).)))))..

Structure

gca     a    --             c    AUU    C      U   G    gcca       --     a  a             ga          gua  g     u     cuua       gug    uua     c 
   uaugu agag  gugagacuguugg uuUA   CCAC AAUAAC UCA Cugc    ugaagag  uagac ga gauuauggcgguu  ggguuucuuc   ga guuga cgauc    auguccu   gaau   aguuu  
   ||||| ||||  ||||||||||||| ||||   |||| |||||| ||| ||||    |||||||  ||||| || |||||||||||||  ||||||||||   || ||||| |||||    |||||||   ||||   ||||| c
   auaca ucuc  uauuuugacaacc AAAU   GGUG UUAUUG AGU gacg    auuucuc  aucug cu cuaauaucgccga  uccgaagaag   cu ugacu gcuag    uacagga   uuug   ucaaa  
-ug     c    ac             a    -AU    U      U   a    ----       ua     g  a             -g          aac  g     u     aaca       gua    ---     g 

Annotation confidence Not enough data

Genome context

GL348713.1: 15243159-15243439 [+]

Mature aly-miR856-5p

• Accession: MIMAT0017641
• Description: Arabidopsis lyrata aly-miR856-5p mature miRNA
• Sequence: 30 - UAAUUCCACCAAUAACUUCAGC - 51
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR856-3p

• Accession: MIMAT0017642
• Description: Arabidopsis lyrata aly-miR856-3p mature miRNA
• Sequence: 233 - UGAUGUUAUUUGUGGUAUAAA - 253
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103