miRBase entry: aly-MIR861

Stem-loop aly-MIR861


Accession
MI0014627
Description
Arabidopsis lyrata aly-MIR861 precursor miRNA
Gene family
MIPF0001190; MIR861


Sequence

aaugauguGUUUGGAGAAAUAUGCAUCAUggagucugucuucuugagaagcauuuuugagugagaauaauucucauaaauaauGAUGGAUAUAUCUUCAAGAACuucguu
(((((.((.((((((((.((((.((((((((((.....)))).((((((..((((((....))))))..))))))......)))))).)))).)))))))).)).)))))

Structure
     u  G        A    G      ggagucugucuucu      gc      g 
aauga gu UUUGGAGA AUAU CAUCAU              ugagaa  auuuuu a
||||| || |||||||| |||| ||||||              ||||||  ||||||  
uugcu CA GAACUUCU UAUA GUAGua              acucuu  uaagag g
     u  A        A    G      --------auaaau      aa      u 


Annotation confidence Not enough data
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Genome context
GL348717.1: 13692799-13692908 [-]

Database links

Mature aly-miR861-5p

Accession MIMAT0017651
Description Arabidopsis lyrata aly-miR861-5p mature miRNA
Sequence 9 - GUUUGGAGAAAUAUGCAUCAU - 29
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR861-3p

Accession MIMAT0017652
Description Arabidopsis lyrata aly-miR861-3p mature miRNA
Sequence 84 - GAUGGAUAUAUCUUCAAGAAC - 104
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103