Stem-loop aly-MIR2111b

Accession

MI0014631

Description

Arabidopsis lyrata aly-MIR2111b precursor miRNA

Gene family

MIPF0000754; MIR2111

Sequence

guacuuggugaugaacgggUAAUCUGCAUCCUGAGGUUUAaaacuuuauaagcauuuacguaugugacuauauaguuuuuuuaAUCCUCGGGAUACAGAUUACCucuuccuuacucgaaguac
(((((((((((.(((.((((((((((.(((((((((.((((((((.((((..(((........)))..)))).)))...))))).))))))))).)))))))))).))).)))))..))))))

Structure

      --     u   c          C         U     ---   u    ag   uua 
guacuu  gguga gaa gggUAAUCUG AUCCUGAGG UUAaa   acu uaua  cau   c
||||||  ||||| ||| |||||||||| ||||||||| |||||   ||| ||||  |||    
caugaa  ucauu cuu uCCAUUAGAC UAGGGCUCC Aauuu   uga auau  gug   g
      gc     c   c          A         U     uuu   u    ca   uau 

Annotation confidence Not enough data

Genome context

GL348718.1: 474781-474903 [+]

Mature aly-miR2111b-5p

• Accession: MIMAT0017659
• Description: Arabidopsis lyrata aly-miR2111b-5p mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUA - 40
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR2111b-3p

• Accession: MIMAT0017660
• Description: Arabidopsis lyrata aly-miR2111b-3p mature miRNA
• Sequence: 84 - AUCCUCGGGAUACAGAUUACC - 104
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103