miRBase entry: aly-MIR319d

Stem-loop aly-MIR319d


Accession
MI0014633
Description
Arabidopsis lyrata aly-MIR319d precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

4 reads, 139 reads per million, 1 experiments
auagauagauauaugaaucgagauuaaaauagauagauauagaaGGAGAUUCUUUCAGUCCAGUCauggauagaaaaagaagaggguagaaauaucugccgacucauccauccaaacacucgugguagagaaacgaucaauuuuaaaccgcagugacuguaugaaugaugcgggagauauuuuugauccuucuuuaucuguguUUGGACUGAAGGGAGCUCCUUcuuuuucuacaauuuuuucauuuuuuucucaucaucuguuuau
(((((((((....(((...((((..(((((.((((((...((((((((.((((((((((((((.((((((((....((((((.((.(((((((((((.(((..((((.(((.((..((((.(((((..((((........))))..)))))))))..)).))).))))..))).))))))))))).)))))))))))))))).)))))))))))))).))))))))...))))........)))))))..)))).))))))))))))

Structure
         uaua   auc    uu     a  --------    uau        A              U        gaaa      a  g           g   ac    c   c  aa    c     ag    acg 
auagauaga    uga   gaga  aaaau ga        uaga   agaaGGAG UUCUUUCAGUCCAG Cauggaua    aagaag gg uagaaauaucu ccg  ucau cau ca  cacu guggu  agaa   a
|||||||||    |||   ||||  ||||| ||        ||||   |||||||| |||||||||||||| ||||||||    |||||| || ||||||||||| |||  |||| ||| ||  |||| |||||  ||||    
uauuugucu    acu   cucu  uuuua cu        aucu   ucUUCCUC AGGGAAGUCAGGUU gugucuau    uucuuc cu guuuuuauaga ggc  agua gua gu  guga cgcca  uuuu   u
         ----   --a    uu     -  uuuuuaac    uuu        G              u        ----      -  a           g   gu    a   u  ca    -     aa    aac 


Annotation confidence Not enough data
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Genome context
GL348716.1: 18166558-18166824 [+]

Database links

Mature aly-miR319d-5p

Accession MIMAT0017663
Description Arabidopsis lyrata aly-miR319d-5p mature miRNA
Sequence 45 - GGAGAUUCUUUCAGUCCAGUC - 65
Evidence experimental
Illumina [1]

Mature aly-miR319d-3p

Accession MIMAT0017664
Description Arabidopsis lyrata aly-miR319d-3p mature miRNA
Sequence 204 - UUGGACUGAAGGGAGCUCCUU - 224
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089