miRBase entry: aly-MIR395h

Stem-loop aly-MIR395h


Accession
MI0014635
Description
Arabidopsis lyrata aly-MIR395h precursor miRNA
Gene family
MIPF0000016; MIR395


Sequence

gucaacuguccccuugaGUUCCCUUAAACGCUUCAUUGuucauacuuugugaguuuguguucuaagaucuaucgaccgauaaaucaaucugaugaacaCUGAAGUGUUUGGGGGGACUCuaggugacaucuuggc
(((((.((((.(((.((((((((((((((((((((.(((((((.(....(((..(((.(((............))))))....)))....)))))))).)))))))))))))))))))).))).))))..)))))

Structure
     -c    c   u                    U       a uuug   --gu   u   cuaag 
gucaa  uguc ccu gaGUUCCCUUAAACGCUUCA UGuucau c    uga    uug guu     a
|||||  |||| ||| |||||||||||||||||||| ||||||| |    |||    ||| |||      
cgguu  acag gga CUCAGGGGGGUUUGUGAAGU acaagua g    acu    agc cag     u
     cu    u   u                    C       - ucua   aaau   -   cuauc 


Annotation confidence Not enough data
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Genome context
GL348714.1: 14006209-14006343 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from aly-MIR395h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR395h-5p

Accession MIMAT0017667
Description Arabidopsis lyrata aly-miR395h-5p mature miRNA
Sequence 18 - GUUCCCUUAAACGCUUCAUUG - 38
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR395h-3p

Accession MIMAT0017668
Description Arabidopsis lyrata aly-miR395h-3p mature miRNA
Sequence 99 - CUGAAGUGUUUGGGGGGACUC - 119
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103