Stem-loop aly-MIR399i

Accession

MI0014638

Description

Arabidopsis lyrata aly-MIR399i precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

gcaugguuggauuacaGGGCAAAUACUCCAUUGGCAGAuaguuuucguugcaucuauauuauugauuaucgauguaugaaaaauucuuuacUGCCAAAGGAGAUUUGCCCCGcaauucaucccgugc
((((((.((((((.(.((((((((.((((.((((((((.(((((((((.(((((.(((........))).))))))))))))...)).).))))))).)))))))))))).).))))))..))))))

Structure

      -u      a a        A    A       - u  ---       u     u   uua 
gcaugg  uggauu c GGGCAAAU CUCC UUGGCAG A ag   uuuucgu gcauc aua   u
||||||  |||||| | |||||||| |||| ||||||| | ||   ||||||| ||||| |||    
cgugcc  acuuaa G CCCGUUUA GAGG AACCGUc u uc   aaaagua uguag uau   u
      cu      c C        -    A       a u  uua       -     c   uag 

Annotation confidence Not enough data

Genome context

GL348713.1: 12888628-12888754 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from aly-MIR399i

Mature aly-miR399i-5p

• Accession: MIMAT0017673
• Description: Arabidopsis lyrata aly-miR399i-5p mature miRNA
• Sequence: 17 - GGGCAAAUACUCCAUUGGCAGA - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR399i-3p

• Accession: MIMAT0017674
• Description: Arabidopsis lyrata aly-miR399i-3p mature miRNA
• Sequence: 92 - UGCCAAAGGAGAUUUGCCCCG - 112
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103