miRBase entry: aly-MIR402

Stem-loop aly-MIR402


Accession
MI0014641
Description
Arabidopsis lyrata aly-MIR402 precursor miRNA
Gene family
MIPF0001123; MIR402


Sequence

4 reads, 139 reads per million, 1 experiments
gaguugcauaguggcagucuucuuuuguuuuuauuucaccaugauccUUGGCCUAUUGAACCUCUGUUUuaacugcuuuugaaaaguuuuccuuuuuagaaaucuucuugucucuuucuccaacaacaucccguuaguucuuggaagaaauuaagacugacuuccaaaaacccuuuuaaaACAGAGUUCCGUAGACCACGGauugcaaaagagacuaugccacugaaaacuu
(((((...((((((((((((.(((((((..............(((((.(((.((((.((((.((((((((((....((((((((((.....))))))))))........((((.(((((((((.(((.........))).)))).)))))...))))..................)))))))))))))).)))).))).))))))))))))))))..))))))))..)))))

Structure
     gca        --    u       uuuuauuucaccau     U   C    U    C          cugcuuuugaaaaguuuuccuuuuuagaaaucuucuu    --c     -    c   auc 
gaguu   uaguggca  gucu cuuuugu              gaucc UGG CUAU GAAC UCUGUUUuaa                                     gucu   uuucu ccaa aac   c
|||||   ||||||||  |||| |||||||              ||||| ||| |||| |||| ||||||||||                                     ||||   ||||| |||| |||   c
uucaa   gucaccgu  caga gaaaacg              uuaGG ACC GAUG CUUG AGACAaaauu                                     caga   aaaga gguu uug   g
     -aa        au    -       --------------     C   A    C    -          -------------------uucccaaaaaccuucagu    auu     a    c   auu 


Annotation confidence Not enough data
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Genome context
GL348714.1: 17541836-17542067 [+]

Database links

Mature aly-miR402-5p

Accession MIMAT0017681
Description Arabidopsis lyrata aly-miR402-5p mature miRNA
Sequence 48 - UUGGCCUAUUGAACCUCUGUUU - 69
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR402-3p

Accession MIMAT0017682
Description Arabidopsis lyrata aly-miR402-3p mature miRNA
Sequence 181 - ACAGAGUUCCGUAGACCACGG - 201
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103