Stem-loop cin-mir-4046

Accession

MI0015597

Description

Ciona intestinalis cin-mir-4046 precursor miRNA

Sequence

782 reads, 280 reads per million, 2 experiments

CAGGGUGUUGCGUGUUACUUguguauuaugacaucaUCAGUAACACGAAUACGUCCUG
(((((((((.(((((((((.(((...........))).))))))))))))))..))))

Structure

    --     G         U   uauu 
CAGG  GUGUU CGUGUUACU gug    a
||||  ||||| ||||||||| |||    u
GUCC  CAUAA GCACAAUGA Uac    g
    UG     -         C   uaca 

Annotation confidence Medium

Genome context

13q: 2008717-2008774 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-4046

Mature cin-miR-4046-5p

• Accession: MIMAT0016581
• Description: Ciona intestinalis cin-miR-4046-5p mature miRNA
• Sequence: 1 - CAGGGUGUUGCGUGUUACUU - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4046-3p

• Accession: MIMAT0016582
• Description: Ciona intestinalis cin-miR-4046-3p mature miRNA
• Sequence: 37 - UCAGUAACACGAAUACGUCCUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39