miRBase entry: cin-mir-4086

Stem-loop cin-mir-4086


Accession
MI0015639
Description
Ciona intestinalis cin-mir-4086 precursor miRNA


Sequence

gggaguuucccaucaaaauacuuuuuauaauuuuagCAUUUUGAUGGCUACCUCCC
(((((.(..((((((((((.((............)).))))))))))..).)))))

Structure
     u uc          a  uuuua 
gggag u  ccaucaaaau cu     u
||||| |  |||||||||| ||      
CCCUC A  GGUAGUUUUA ga     a
     C UC          C  uuuua 


Annotation confidence Not enough data
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Genome context
5q: 864977-865032 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cin-mir-4086
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4086-3p

Accession MIMAT0016661
Description Ciona intestinalis cin-miR-4086-3p mature miRNA
Sequence 37 - CAUUUUGAUGGCUACCUCCC - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39