miRBase entry: aly-MIR4222

Stem-loop aly-MIR4222


Accession
MI0015783
Description
Arabidopsis lyrata aly-MIR4222 precursor miRNA


Sequence

13 reads, 384 reads per million, 1 experiments
accaucccuauguugaaagcgguaacaaucucgaugaaagagaggauguagacgcucaacugauauaggaagcaauuguuuugauuauugcauccuucaccuuguugagcaucuauacccacucUUUCAUUCGAAAUUGUUACCGCccucagccuuuggauauuuc
...((((....(((((..(((((((((((.((((((((((((.((.((((((.(((((((......((((.(((((..........))))).)))).......))))))).)))))).)).)))))))).)))).)))))))))))..)))))....)))).....

Structure
--acc    cuau     aa           c    -        a  a      c       -ugauau    a     uguu 
     aucc    guuga  gcgguaacaau ucga ugaaagag gg uguaga gcucaac       agga gcaau    u
     ||||    |||||  ||||||||||| |||| |||||||| || |||||| |||||||       |||| |||||     
     uagg    cgacu  CGCCAUUGUUA AGCU ACUUUcuc cc auaucu cgaguug       uccu cguua    u
cuuua    uuuc     cc           A    U        a  c      a       uuccacu    a     uuag 


Annotation confidence Not enough data
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Genome context
GL348717.1: 12382831-12382996 [-]

Database links

Mature aly-miR4222

Accession MIMAT0017910
Description Arabidopsis lyrata aly-miR4222 mature miRNA
Sequence 125 - UUUCAUUCGAAAUUGUUACCGC - 146
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103