miRBase entry: aly-MIR4223

Stem-loop aly-MIR4223


Accession
MI0015784
Description
Arabidopsis lyrata aly-MIR4223 precursor miRNA


Sequence

5 reads, 174 reads per million, 1 experiments
gcuucuugcuuugcuugacuAUGGAAUUUGAUAAAUAAACACaaaauauuaaacgcagccguuuucuggugggccaaaguuucccuuuuucguuuaauuuuuguguuauuuaucaaauuccauugucaagcaaaaaagacaaccu
...((((..((((((((((.((((((((((((((((((.(((((((.((((((((..((((.....))))(((.........))).....))))))))))))))))))))))))))))))))).)))))))))).))))......

Structure
---gcu    gc          u                  A       u        ------------------ca    u 
      ucuu  uuugcuugac AUGGAAUUUGAUAAAUAA CACaaaa auuaaacg                    gccg u
      ||||  |||||||||| |||||||||||||||||| ||||||| ||||||||                    |||| u
      agaa  aaacgaacug uaccuuaaacuauuuauu guguuuu uaauuugc                    uggu u
uccaac    -a          u                  -       -        uuuuucccuuugaaaccggg    c 


Annotation confidence Not enough data
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Genome context
GL348713.1: 24251060-24251204 [-]

Database links

Mature aly-miR4223

Accession MIMAT0017911
Description Arabidopsis lyrata aly-miR4223 mature miRNA
Sequence 21 - AUGGAAUUUGAUAAAUAAACAC - 42
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103