Stem-loop gma-MIR482b

Accession

MI0016527

Description

Glycine max gma-MIR482b precursor miRNA

Literature search

22 open access papers mention gma-MIR482b
(51 sentences)

Sequence

ggUAUGGGGGGAUUGGGAAGGAAUauccauaagcaaaauaugcuauuUCUUCCCUACACCUCCCAUACC
(((((((((((...(((((((((((..((((.......)))).)))))))))))....)))))))))))

Structure

           -AUU           uc    ag 
ggUAUGGGGGG    GGGAAGGAAUa  caua  c
|||||||||||    |||||||||||  ||||  a
CCAUACCCUCC    CCCUUCUuuau  guau  a
           ACAU           -c    aa 

Annotation confidence Low

Genome context

chr20: 36454144-36454212 [+]

Mature gma-miR482b-5p

• Accession: MIMAT0018286
• Description: Glycine max gma-miR482b-5p mature miRNA
• Sequence: 3 - UAUGGGGGGAUUGGGAAGGAAU - 24
• Evidence: experimental ; Illumina [1,3], 454 [2]

Mature gma-miR482b-3p

• Accession: MIMAT0020952
• Description: Glycine max gma-miR482b-3p mature miRNA
• Sequence: 48 - UCUUCCCUACACCUCCCAUACC - 69
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


3. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506