miRBase entry: gma-MIR482b

Stem-loop gma-MIR482b


Accession
MI0016527
Description
Glycine max gma-MIR482b precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
22 open access papers mention gma-MIR482b
(51 sentences)

Sequence

ggUAUGGGGGGAUUGGGAAGGAAUauccauaagcaaaauaugcuauuUCUUCCCUACACCUCCCAUACC
(((((((((((...(((((((((((..((((.......)))).)))))))))))....)))))))))))

Structure
           -AUU           uc    ag 
ggUAUGGGGGG    GGGAAGGAAUa  caua  c
|||||||||||    |||||||||||  ||||  a
CCAUACCCUCC    CCCUUCUuuau  guau  a
           ACAU           -c    aa 


Annotation confidence Not enough data
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Genome context
chr20: 36454144-36454212 [+]

Database links

Mature gma-miR482b-5p

Accession MIMAT0018286
Description Glycine max gma-miR482b-5p mature miRNA
Sequence 3 - UAUGGGGGGAUUGGGAAGGAAU - 24
Evidence experimental
Illumina [1,3], 454 [2]

Mature gma-miR482b-3p

Accession MIMAT0020952
Description Glycine max gma-miR482b-3p mature miRNA
Sequence 48 - UCUUCCCUACACCUCCCAUACC - 69
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14

  2. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  3. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506