miRBase entry: hsa-mir-548ah

Stem-loop hsa-mir-548ah


Accession
MI0016796
Symbol
HGNC: MIR548AH
Description
Homo sapiens hsa-mir-548ah precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
56 open access papers mention hsa-mir-548ah
(170 sentences)

Sequence

206 reads, 15 reads per million, 38 experiments
agguuggugcAAAAGUGAUUGCAGUGUUUGccaauaaaaguaaugaCAAAAACUGCAGUUACUUUUGCaccagccc
.((((((((((((((((((((((((.((((.((.((....)).)).)))).)))))))))))))))))))))))).

Structure
a                        G    c  a  a 
 gguuggugcAAAAGUGAUUGCAGU UUUG ca ua a
 |||||||||||||||||||||||| |||| || ||  
 ccgaccaCGUUUUCAUUGACGUCA AAAC gu au a
c                        A    a  a  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 76575551-76575626 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from hsa-mir-548ah
Name Accession Chromosome Start End Strand Confidence




Disease association
hsa-mir-548ah is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-548ah-5p

Accession MIMAT0018972
Description Homo sapiens hsa-miR-548ah-5p mature miRNA
Sequence 11 - AAAAGUGAUUGCAGUGUUUG - 30
Evidence experimental
Illumina [1]

Mature hsa-miR-548ah-3p

Accession MIMAT0020957
Description Homo sapiens hsa-miR-548ah-3p mature miRNA
Sequence 47 - CAAAAACUGCAGUUACUUUUGC - 68
Evidence not_experimental

References

  1. PubMed ID: 20733160
    Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs
    "Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI,"
    "Blood (2010) 116:e118-e127

  2. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52

  3. PubMed ID: 21558790
    Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis
    "Hansen TB, Kjems J, Bramsen JB"
    "RNA Biol (2011) 8:378-383