Stem-loop ppe-MIR6263

Accession

MI0021617

Description

Prunus persica ppe-MIR6263 precursor miRNA

Literature search

1 open access papers mention ppe-MIR6263
(1 sentences)

Sequence

ugggauugcuuauucuauacuuacacucccuuuuuuguuauaguaaaaaguauuuuuaaaaaauaaaauagagcuuAAGUGGACAAAAGGGGAGUGGagaaaucaac
((((((.....))))))..(((.((((((((((((.(((....(((....((((((........))))))....)))....))))))))))))))))))........

Structure

ugggauugcuuauucuaua   a            u   auag   aaag      uaa 
                   cuu cacucccuuuuu guu    uaa    uauuuu   a
                   ||| |||||||||||| |||    |||    ||||||    
                   gaG GUGAGGGGAAAA CAG    Auu    auaaaa   a
-----------caacuaaa   -            -   GUGA   cgag      uaa 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG2: 20351138-20351244 [+]

Mature ppe-miR6263

• Accession: MIMAT0027280
• Description: Prunus persica ppe-miR6263 mature miRNA
• Sequence: 77 - AAGUGGACAAAAGGGGAGUGG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371