Stem-loop sma-mir-124a

Accession

MI0021818

Description

Schistosoma mansoni sma-mir-124a precursor miRNA

Literature search

4 open access papers mention sma-mir-124a
(21 sentences)

Sequence

uuuguaugCCAUUUUCCGCGAUUGCCUUGAUGAguuauaaauauuauucauaacaaaaauauUAAGGCACGCGGUGAAUGUCAuccacggagc
((((((((.(((((.(((((..((((((((((.(((((.(((...))).))))).....))))))))))))))).))))).)))..)))))..

Structure

--     --   C     U     AU          ----A     a   a 
  uuugu  aug CAUUU CCGCG  UGCCUUGAUG     guuau aau  
  |||||  ||| ||||| |||||  ||||||||||     ||||| ||| u
  aggca  uAC GUAAG GGCGC  ACGGAAUuau     caaua uua  
cg     cc   U     U     --          aaaaa     c   u 

Annotation confidence Not enough data

Genome context

Chr_6: 18429525-18429617 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sma-mir-124a

Mature sma-miR-124a-5p

• Accession: MIMAT0025025
• Description: Schistosoma mansoni sma-miR-124a-5p mature miRNA
• Sequence: 9 - CCAUUUUCCGCGAUUGCCUUGAUGA - 33
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-124a-3p

• Accession: MIMAT0025026
• Description: Schistosoma mansoni sma-miR-124a-3p mature miRNA
• Sequence: 63 - UAAGGCACGCGGUGAAUGUCA - 83
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402