Stem-loop sequence mmu-mir-6345

Accession

MI0021873 (change log)

Symbol

MGI:Mir6345

Description

Mus musculus miR-6345 stem-loop

Stem-loop

   -      u    --uuu  uu      gug   -    a cac  cu  g  u    -      agug 
5'  gcuuug gagu     cc  guuuca   uua gucu g   ug  ca gg gaac uaguac    u
    |||||| ||||     ||  ||||||   ||| |||| |   ||  || || |||| ||||||    g
3'  cgaaau cucg     gg  caaagu   aau cgga c   ac  gu cc cuug aucaug    u
   c      u    ucuuu  uu      --a   a    - ---  ag  a  u    g      augg 

Deep sequencing

3 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr1: 93352158-93352285 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000051857 ; Ppp1r7-001; intron 5

  OTTMUST00000051858 ; Ppp1r7-002; intron 5

  ENSMUST00000027494 ; Ppp1r7-001; intron 5

  ENSMUST00000127141 ; Ppp1r7-002; intron 5

Clustered miRNAs

< 10kb from mmu-mir-6345

• mmu-mir-6902: chr1: 93346092-93346155 [+]
• mmu-mir-6345: chr1: 93352158-93352285 [+]

Database links

• MGI:Mir6345
• miRBase Tracker:MI0021873

Mature sequence mmu-miR-6345

• Accession: MIMAT0025088
• Sequence: 34 - uagcacugcucagggugaacu - 54
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6345
  • miRDB:mmu-miR-6345

References

1. PMID:22319597 "Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function" Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T PLoS One. 7:e30933(2012).