Stem-loop sequence mmu-mir-6418

Accession

MI0021956 (change log)

Symbol

MGI:Mir6418

Description

Mus musculus miR-6418 stem-loop

Literature search

1 open access papers mention mmu-mir-6418
(1 sentences)

Stem-loop

   a -    -   a    a ---a   c   - --a          a a a    cu   -cu ua 
5'  g ccag aag ggca g    aca ggu c   ggggaaggga g g ugca  guc   c  a
    | |||| ||| |||| |    ||| ||| |   |||||||||| | | ||||  |||   |   
3'  c gguc uuc ccgu c    ugu cca g   ccucuuuccu c c acgu  cag   g  a
   g a    c   g    - guac   -   u gga          - - a    --   ucc ua 

Deep sequencing

380 reads, 1.37 reads per million, 73 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr5: 137529480-137529594 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000052084 ; Epo-001; intron 1

  OTTMUST00000039058 ; Gnb2-007; exon 2

  OTTMUST00000039060 ; Gnb2-010; exon 2

  OTTMUST00000092186 ; Gnb2-014; exon 3

  OTTMUST00000039059 ; Gnb2-009; exon 3

  OTTMUST00000042586 ; Gnb2-012; exon 4

  OTTMUST00000092187 ; Gnb2-013; exon 5

  OTTMUST00000039056 ; Gnb2-006; exon 5

  OTTMUST00000039052 ; Gnb2-002; exon 6

  OTTMUST00000042584 ; Gnb2-008; exon 6

  OTTMUST00000039054 ; Gnb2-004; exon 6

  OTTMUST00000039051 ; Gnb2-001; exon 7

  OTTMUST00000042585 ; Gnb2-011; exon 7

  OTTMUST00000039055 ; Gnb2-005; exon 7

  OTTMUST00000039053 ; Gnb2-003; exon 7

  ENSMUST00000111038 ; Epo-001; intron 1

  ENSMUST00000144667 ; Gnb2-007; exon 2

  ENSMUST00000145238 ; Gnb2-010; exon 2

  ENSMUST00000168746 ; Gnb2-014; exon 3

  ENSMUST00000125868 ; Gnb2-009; exon 3

  ENSMUST00000143495 ; Gnb2-012; exon 4

  ENSMUST00000170293 ; Gnb2-013; exon 5

  ENSMUST00000142252 ; Gnb2-006; exon 5

  ENSMUST00000111023 ; Gnb2-002; exon 6

  ENSMUST00000111020 ; Gnb2-008; exon 6

  ENSMUST00000150063 ; Gnb2-004; exon 6

  ENSMUST00000031726 ; Gnb2-001; exon 7

  ENSMUST00000111027 ; Gnb2-011; exon 7

  ENSMUST00000132525 ; Gnb2-005; exon 7

  ENSMUST00000140139 ; Gnb2-003; exon 7

Database links

• MGI:Mir6418
• RNAcentral:URS000075B827_10090
• miRBase Tracker:MI0021956

Mature sequence mmu-miR-6418-5p

• Accession: MIMAT0025173
• Sequence: 24 - ucaggggaagggaagagaugc - 44
• Deep sequencing: 43 reads, 23 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6418-5p
  • miRDB:mmu-miR-6418-5p

Mature sequence mmu-miR-6418-3p

• Accession: MIMAT0025174
• Sequence: 65 - acugcaaccuccuuucuccagg - 86
• Deep sequencing: 319 reads, 65 experiments
• Evidence: experimental; SOLiD [1]
• Database links:
  • RNAcentral:URS000075D2B8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-6418-3p
  • miRDB:mmu-miR-6418-3p

References

1. PMID:22319597 "Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function" Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T PLoS One. 7:e30933(2012).