Stem-loop ptc-MIR6460

Accession

MI0021966

Description

Populus trichocarpa ptc-MIR6460 precursor miRNA

Sequence

gauaucucauucauauaucauuuauuccagcauucuugauugaaugccacauaucauucauuccugcuuuuuauaugaaaagucggaaugaaUGAUAUGUGGCAUUCAAUCGAgaaugcuggaauaaaugauaucugaacaauugauc
......(((((((.((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((....))))))).)))))))))))))))))))))))))))))))))))))))))))))))))).))))....)))..

Structure

gauauc   ----    u                                                  u       a 
      uca    uuca auaucauuuauuccagcauucuugauugaaugccacauaucauucauucc gcuuuuu u
      |||    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  
      agu    aagu uauaguaaauaaggucguaagAGCUAACUUACGGUGUAUAGUaaguaagg ugaaaag a
----cu   uaac    c                                                  c       u 

Annotation confidence Not enough data

Genome context

CM000339.2: 14915421-14915568 [+]

Mature ptc-miR6460

• Accession: MIMAT0025186
• Description: Populus trichocarpa ptc-miR6460 mature miRNA
• Sequence: 93 - UGAUAUGUGGCAUUCAAUCGA - 113
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233