Stem-loop sequence ptc-MIR6462c

AccessionMI0021982 (change log)
DescriptionPopulus trichocarpa miR6462c stem-loop
Gene family MIPF0001393; MIR6462
Literature search

1 open access papers mention ptc-MIR6462c
(2 sentences)

Stem-loop 
       a  c   c   a             g           uguacagggguagggaaggggaaga 
5' augg ug gac ggc agggacaaaaaug cauaagagaga                         g
   |||| || ||| ||| ||||||||||||| |||||||||||                          
3' uacc gc cug ccg ucccuguuuuuac guauucucuuu                         a
       c  u   a   c             -           uucuuccccgcaucuauagcuagaa
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000341.2: 24280110-24280242 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR6462c
ptc-MIR6462bCM000341.2: 24270125-24270257 [+]
ptc-MIR6462fCM000341.2: 24270440-24270552 [+]
ptc-MIR6462cCM000341.2: 24280110-24280242 [+]
Database links

Mature sequence ptc-miR6462c-5p

Accession MIMAT0025205
Sequence

16 -  

aagggacaaaaauggcauaaga

 - 37

Get sequence
Evidence experimental; miRNAseq [1], Illumina [2]

Mature sequence ptc-miR6462c-3p

Accession MIMAT0025206
Sequence

96 -  

ucucuuaugcauuuuuguccc

 - 116

Get sequence
Evidence experimental; miRNAseq [1], Illumina [2]

References

1
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).
2
PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).