Stem-loop sequence mes-MIR169ac

Accession

MI0024279 (change log)

Description

Manihot esculenta miR169ac stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

10 open access papers mention mes-MIR169ac
(28 sentences)

Stem-loop

      u   -    -     u    u      cuc uc   c          --a     g   ---aa    ga 
5' guu gau agcc aagga gacu gccuau   c  caa aggguuucaa   cagau aau     ugca  a
   ||| ||| |||| ||||| |||| ||||||   |  ||| ||||||||||   ||||| |||     ||||   
3' cag cug ucgg uuccu cuga cggaua   g  guu ucucgagguu   gucua uua     gcgu  g
      u   a    c     -    -      cuc gu   u          uag     a   gggug    aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold01701: 436630-436768 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0024279

Mature sequence mes-miR169ac

• Accession: MIMAT0029237
• Sequence: 7 - uagccaaggaugacuugccu - 26
• Evidence: experimental; Illumina [2]

References

1. PMID:22388699 "Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)" Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J Mol Biotechnol. 53:257-269(2013).
2. PMID:26822616 "High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs" Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN BMC Genomics. 17:85(2016).