miRBase entry: mmu-mir-216c

Stem-loop mmu-mir-216c


Accession
MI0025032
Symbol
MGI: Mir216c
Description
Mus musculus mmu-mir-216c precursor miRNA

Literature search
15 open access papers mention mmu-mir-216c
(38 sentences)

Sequence

11404 reads, 4 reads per million, 40 experiments
GAAGAAUCUCUACAGGUAAGUGUgugguuucuucagugacaucacaUUUGCCUGCAGAGAUUUCCCAGU
...((((((((.((((((((((((..(((........)))..)))))))))))).))))))))......

Structure
---GAA        A            ug   ucu 
      GAAUCUCU CAGGUAAGUGUg  guu   u
      |||||||| ||||||||||||  |||    
      UUUAGAGA GUCCGUUUacac  cag   c
UGACCC        C            ua   uga 


Annotation confidence Not enough data
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Genome context
chr11: 28746198-28746266 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-216c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-216c-5p

Accession MIMAT0029888
Description Mus musculus mmu-miR-216c-5p mature miRNA
Sequence 1 - GAAGAAUCUCUACAGGUAAGUGU - 23
Evidence experimental
RNAseq [1]

Mature mmu-miR-216c-3p

Accession MIMAT0029889
Description Mus musculus mmu-miR-216c-3p mature miRNA
Sequence 47 - UUUGCCUGCAGAGAUUUCCCAGU - 69
Evidence experimental
RNAseq [1]

References

  1. PubMed ID: 23325850
    Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
    "Castellano L, Stebbing J"
    "Nucleic Acids Res (2013) 41:3339-3351