miRBase entry: aly-MIR2111c

Stem-loop aly-MIR2111c


Accession
MI0026013
Description
Arabidopsis lyrata aly-MIR2111c precursor miRNA
Gene family
MIPF0000754; MIR2111


Sequence

guauuggugaggaucgggUAAUCUGCAUCCUGAGGUUUAaagcuuaauuuaagcagaaaauuuguauacgcauauacguauguguguugguauagcuuuuaGUCCUCGGGAUGCGGAUUACCucuuccuuacuuacaauac
(((((((((((((..((((((((((((((((((((...((((((........(((((...)))))(((((((((....)))))))))......))))))....))))))))))))))))))))..)))))))...))))))

Structure
      ---       uc                    -UUU      uaauuuaagcagaaaauuugu         u 
guauug   gugagga  gggUAAUCUGCAUCCUGAGG    Aaagcu                     auacgcaua a
||||||   |||||||  ||||||||||||||||||||    ||||||                     |||||||||  
cauaac   cauuccu  uCCAUUAGGCGUAGGGCUCC    uuucga                     uguguguau c
      auu       uc                    UGau      ---------------uauggu         g 


Annotation confidence Not enough data
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Genome context
GL348768.1: 2630-2770 [-]

Database links

Mature aly-miR2111c-5p

Accession MIMAT0031384
Description Arabidopsis lyrata aly-miR2111c-5p mature miRNA
Sequence 19 - UAAUCUGCAUCCUGAGGUUUA - 39
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR2111c-3p

Accession MIMAT0031385
Description Arabidopsis lyrata aly-miR2111c-3p mature miRNA
Sequence 102 - GUCCUCGGGAUGCGGAUUACC - 122
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103