Stem-loop sequence aga-mir-2945

Accession

MI0033348 (change log)

Description

Anopheles gambiae miR-2945 stem-loop

Literature search

2 open access papers mention aga-mir-2945
(3 sentences)

Stem-loop

   --           a      aauaa    -----u  g 
5'   agcgagucugc cucugg     caug      cg a
     ||||||||||| ||||||     ||||      ||  
3'   uugcucagacg gagauc     guac      gc u
   gu           -      ----a    ucauau  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr3R: 10314332-10314397 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0033348

Mature sequence aga-miR-2945-5p

• Accession: MIMAT0041515
• Sequence: 1 - agcgagucugcacucuggaauaac - 24
• Evidence: experimental; Illumina [1]

Mature sequence aga-miR-2945-3p

• Accession: MIMAT0041516
• Sequence: 45 - ugacuagaggcagacucguuug - 66
• Evidence: experimental; Illumina [1]

References

1. PMID:25766668 "The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs" Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T BMC Genomics. 16:100(2015).