Stem-loop sequence aga-mir-286b

Accession

MI0033377 (change log)

Description

Anopheles gambiae miR-286b stem-loop

Literature search

2 open access papers mention aga-mir-286b
(2 sentences)

Stem-loop

   ----    a   -   ag        ---   g uu 
5'     gcga ugu cgg  uagucgcu   ugu a  g
       |||| ||| |||  ||||||||   ||| |   
3'     ugcu aca gcc  aucaguga   aca u  a
   ccua    c   a   ag        aaa   g ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr2L: 3537482-3537547 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-286b

• aga-mir-286b: chr2L: 3537482-3537547 [-]
• aga-mir-2944a-2: chr2L: 3537080-3537136 [-]

Database links

• miRBase Tracker:MI0033377

Mature sequence aga-miR-286b-5p

• Accession: MIMAT0041566
• Sequence: 1 - gcgaaugucggaguagucgcu - 21
• Evidence: experimental; Illumina [1]

Mature sequence aga-miR-286b-3p

• Accession: MIMAT0041567
• Sequence: 43 - ugacuagaccgaacacucguaucc - 66
• Evidence: experimental; Illumina [1]

References

1. PMID:25766668 "The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs" Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T BMC Genomics. 16:100(2015).