Stem-loop sequence aga-mir-2c

Accession

MI0033385 (change log)

Description

Anopheles gambiae miR-2c stem-loop

Literature search

2 open access papers mention aga-mir-2c
(14 sentences)

Stem-loop

   cg               -u         c    uguuuaucaccaaauaaaccg 
5'   gacugggcucaucaa  ugguugugg uaug                     g
     |||||||||||||||  ||||||||| ||||                     a
3'   cuggcucgaguaguu  accgacacu auac                     c
   gg               uu         -    uaucacuuaucgccuuuugcu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr2L: 37758085-37758193 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-2c

• aga-mir-2-2: chr2L: 37758699-37758796 [-]
• aga-mir-2c: chr2L: 37758085-37758193 [-]
• aga-mir-13b: chr2L: 37757564-37757657 [-]
• aga-mir-2b: chr2L: 37757412-37757490 [-]
• aga-mir-2-1: chr2L: 37757103-37757189 [-]

Database links

• miRBase Tracker:MI0033385

Mature sequence aga-miR-2c-5p

• Accession: MIMAT0041578
• Sequence: 9 - gcucaucaauugguuguggcu - 29
• Evidence: experimental; Illumina [1]

Mature sequence aga-miR-2c-3p

• Accession: MIMAT0041579
• Sequence: 80 - uaucacagccauuuugaugagc - 101
• Evidence: experimental; Illumina [1]

References

1. PMID:25766668 "The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs" Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T BMC Genomics. 16:100(2015).